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Category Archives: Companion Diagnostics

Supreme Court Asked for Further Clarity on Patent-Eligibility of Diagnostic Claims

Posted in Biomarkers; Companion Diagnostics; Personalized Medicine

Did the Federal Circuit incorrectly interpret and apply the holding of the U.S. Supreme Court’s decision regarding patent-eligibility of medical methods as set forth in Mayo Collaborative Services v. Prometheus Laboratories, Inc., 132 S.Ct. 1289 (2012)(“Mayo“)? Intema Ltd. (“Intema”) asserts that yes, the Federal Circuit did err when it determined that Intema’s diagnostic patent claims are invalid for failing to satisfy 35 U.S.C. Section 101. (See PerkinElmer, Inc. v. Intema Ltd., 496 F. App’x 65, 105, U.S.P.Q.2d 1960 (Fed. Cir. 2012)). Late last month, Intema petitioned the U.S. Supreme Court to reverse the Federal Circuit’s holding that the claims of U.S. Patent No. 6,573,103 are invalid as patent-ineligible under Section 101. Intema contends that the Federal Circuit erred by misapplying Mayo in a manner that creates erroneous, rigid rules for determining patent-ineligibility in cases involving laws of nature. Failure to reverse the Federal Circuit’s decision, Intema argues, will have the practical effect of rendering most diagnostic, screening and personal medicine tests unpatentable.

The ’103 Patent

U.S. Patent No. 6,573,103 (the ’103 Patent) entitled “Antenatal Screening For Down’s Syndrome” issued on June 3, 2003. All twenty-four claims relate to methods for determining whether a pregnant woman is at an increased risk of having a fetus with Down’s syndrome. Claim 1 is representative:

1. A method of determining whether a pregnant woman is at an increased risk of having a fetus with Down’s syndrome, the method comprising the steps of:

measuring the level of at least one screening marker from a first trimester of pregnancy by:

 (i) assaying a sample obtained from the pregnant woman at said first trimester of pregnancy for at least one first biochemical screening marker; and/or

 (ii) measuring at least one first ultrasound screening marker from an ultrasound scan taken at said first trimester of pregnancy;

measuring the level of at least one second screening marker from a second trimester of pregnancy, the at least one second screening marker from the second trimester of pregnancy being different from the at least one first screening marker from the first trimester of pregnancy, by:

 (i) assaying a sample obtained from the pregnant woman at said second trimester of pregnancy for at least one second biochemical screening marker; and/or

 (ii) measuring at least one second ultrasound screening marker from an ultrasound scan taken at said second trimester of pregnancy; and

determining the risk of Down’s syndrome by comparing the measured levels of both the at least one first screening marker from the first trimester of pregnancy and the at least one screening marker from the second trimester of pregnancy with observed relative frequency distribution of marker levels in Down’s syndrome pregnancies and in unaffected pregnancies.

The Federal Circuit’s Asserted Errors

Intema argues that the Federal Circuit erred when it ignored material differences between the claims of the ’103 Patent and the claims held invalid by the Supreme Court’s Mayo decision. Such errors include, for example:

  • the failure of the Federal Circuit to recognize the claims of the ’103 Patent are more than the use of a law of nature – the claims embody the use of data gathered was completely non-standard when developed, and improved screening efficacy;
  • the failure of the Federal Circuit to acknowledge that the measuring step, achieves a simple and useful test result using statistical analysis when it wrongly characterized the measuring steps as conventional and obvious presolution activity;
  • the failure of the Federal Circuit to give proper weight to the steps of selecting the measured marker levels during two separate trimesters of pregnancy and the integration of that in a carefully specified manner;
  • the Federal Circuit’s finding that the determining step is insufficient as being a “known and conventional” algorithm;
  • the Federal Circuit’s interpretation of the “assaying” portion of the measuring steps to be insufficient to impart patent-eligibility to the claims because it could be performed without transforming the sample should science develop a totally different system for assaying for a biochemical marker that did not involve such a transformation; and
  • the Federal Circuit’s error in concluding that a transformation, if it existed, would be insufficient relying on another rigid rule excluding all transformations from consideration under Section 101.

Personalized Medicine and Diagnostic Patents

The Supreme Court’s Mayo ruling has created uncertainty for diagnostic technologies that support and promote personalized medicine. Inventions simply defined by correlating a natural biomarker with a clinical outcome or therapeutic treatment are now ineligible for patent protection as a result of the Mayo decision. For inventions that offer more than a simple correlation, patent protection may still be available. However, how much “more” is necessary to move an invention involving a biomarker and correlation to patent-eligibility is still an open question. With that in mind, more clarity and direction would be welcome, provided the Supreme Court does not take the opportunity to further restrict patent protection for these important technologies.

A copy of Intema’s petition is attached.  PerkinElmer’s reply is due June 19, 2013.

FDA Regulation of Laboratory Developed Tests: Benefit or Unnecessary Burden?

Posted in Companion Diagnostics; Diagnostic Methods; FDA; Personalized Medicine; Uncategorized

The U.S. Department of Food and Drug Administration (“FDA”) has previously announced an interest in regulating diagnostic tests used in providing personalized medicine clinical care. Interested stakeholders such as the American Clinical Laboratory Association, the College of American Pathologists, and the Association for Molecular Pathology, have weighed in on whether the FDA can and should expand its jurisdiction to laboratory developed tests (“LDTs) performed by clinical laboratories. Continue reading this entry

Video Interview: Discussing Mayo v. Prometheus With LXBN TV

Posted in Companion Diagnostics; Gene Patents; Genetic Testing; Prometheus

The other day I had the opportunity to speak with Colin O’Keefe of LXBN TV on the subject of Mayo Collaborative Services v. Prometheus Laboratories, Inc. In the short interview, I explain the background of the case, offer my thoughts on why Prometheus’ patent wouldn’t have a detrimental impact on medical research and give my thoughts on what this means for the Myriad “gene patenting” case.

Gene Patenting Case Heads Back to Federal Circuit

Posted in Companion Diagnostics; Gene Patents; Genetic Testing

The U.S. Supreme Court has sent the ACLU “gene patenting” case back to the Federal Circuit for reconsideration in light of its unanimous decision in  Mayo Collaborative Services v. Prometheus Laboratories, Inc., No. 10-1150 (S. Ct. 2012). For a review of the issues, please see Foley & Lardner’s client alert “Supreme Court Tells Federal Circuit to Reconsider Patent Eligibility of Isolated DNA Claims.”

 

Dissecting Prometheus – My Wish List

Posted in 35 U.S.C. 101; Companion Diagnostics; Diagnostic Methods; Gene Patents; Genetic Testing

In his March 23rd Patently-O blog, Dennis Crouch posted a U.S. Patent and Trademark Office memorandum to examiners setting forth the Office’s current thinking on application of the U.S. Supreme Court’s recent Mayo v. Prometheus holding to patent examination. The memorandum preliminarily advises examiners to reject a patent claim under 35 U.S.C. § 101 if the claim Continue reading this entry

Personalized Medicine Market Growing Amid Challenges

Posted in Biomarkers; Companion Diagnostics; Genetic Testing

On the same day that the personalized medicine testing market was reported to have exceeded $28 billion in 2011, the New England Journal of Medicine (NEJM) also reported a perceived stumble to the use of genomic tests that serve personalized medicine. Continue reading this entry

Speak UP – USPTO Seeking Comments on Second Opinion Genetic Tests

Posted in Companion Diagnostics; Genetic Testing; Patent Reform

Today’s Federal Register includes a notice to the public inviting comments on independent second opinion genetic tests where patents and exclusive licenses exist that cover primary genetic diagnostic tests. The comments are collected for the purpose of preparing a report on the subject as required by Section 27 of the America Invents Act (“AIA”).  In addition to soliciting comments, the USPTO will hold two public hearings in support of the genetic testing studies. Continue reading this entry

FDA To Issue Final Guidance For In Vitro Companion Diagnostics in Mid-2012

Posted in Companion Diagnostics; FDA; FDA Guidelines

Elizabeth Mansfield, Ph.D., Director of Personalized Medicine, Office of In Vitro Diagnostics, Center for Devices and Radiological Health of the Food and Drug Administration (FDA) announced today at the 2012 Personalized Medicine World Conference that the FDA is targeting the second quarter of 2012 to release the FDA’s Final Guidance for In Vitro Companion Diagnostic Devices. The FDA issued its Draft Guidance for In Vitro Diagnostic Devices on July 14th, 2011.  A summary of the FDA’s Draft Guidance is provided in our July 17th, 2011 post.  Thirty-three comments on the Draft Guidance were received in response to the FDA’s invitation for comments and suggestions. All public comments are available for viewing at www.regulations.gov, docket ID: FDA 2011-D-0215. The commentators represented pharmaceutical companies, diagnostic companies, trade organizations, interested individuals and patient advocacy groups.  

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Mayo Reported To Start Pilot Study To Provide Whole Genome Sequencing

Posted in Companion Diagnostics; Diagnostic Methods; Gene Patents; Genetic Testing

The Guardian reports that Mayo Clinic (“Mayo”) has announced that it is starting a pilot study to provide whole genome sequencing to patients. As reported, Mayo will launch the pilot study in early 2012 as part of an ambitious move towards an era of proactive genomics. Recall, Mayo Clinic is a named party in the legal challenge to Prometheus Laboratories’ patents on medical diagnostic methods. This challenge is currently awaiting resolution by the U.S. Supreme Court (see our December 7th post). 

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Patent-Eligibility of Medical Methods Considered By U.S. Supreme Court

Posted in Companion Diagnostics; Diagnostic Methods; Gene Patents; Genetic Testing

This post is co-authored by Antoinette F. Konski and Jacqueline D. Wright Bonilla

The U.S. Supreme Court entertained oral argument today in Mayo Collaborative Services v. Prometheus Laboratories, Inc. The case is being closely monitored by the pharmaceutical and biotechnology industry, and in particular those in the industry that patent diagnostic methods and companion diagnostics.  At its core, the case addresses whether certain patent claims directed to diagnostic methods or methods of optimizing therapeutic efficacy for treatment recite patent eligible subject matter under 35 U.S.C. § 101.

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Making The Case for Personalized Medicine

Posted in Biomarkers; Companion Diagnostics; Diagnostic Methods; FDA; Health Care IT

The Personalized Medicine Coalition recently published the third edition of its state of the industry report, The Case for Personalized Medicine (“Report”). While the Coalition acknowledges greater adoption of the principles of personalized medicine by the health care industry and the public; technical, legal, regulatory and payor issues are highlighted for improvement to recognize the industry’s full potential and benefits. This post summarizes the Coalition’s view of the state of the industry and the issues identified as critical to the ongoing development and adoption of personalized medicine.

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FDA Reports on Initiatives to Drive Biomedical Innovation

Posted in Companion Diagnostics; FDA

Today, the FDA issued a report, Driving Biomedical Innovation: Initiatives to Improve Products for Patients (“Report”) which outlines proactive initiatives to promote science and innovation to meet today’s and the future’s health care challenges. The Report notes that because of its role as both a regulator and a public health agency facilitating the development of new and innovative products, the FDA has a unique perspective on the health of the biomedical industry. The Report acknowledges that while the quality of the submissions for new health care products has increased in the last few years, the number of new innovative products has decreased. Last year the FDA received the lowest number of applications for novel drugs in nearly two decades.

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The Genomics and Personalized Medicine Act: A Look Ahead

Posted in Companion Diagnostics; FDA; Genetic Testing; Genomics and Personalized Medicine Act; Reimbursement

Institutional barriers (e.g., limitations on product reimbursement, unclear regulatory requirements and occasional government redundancies) have been faulted for relatively slow progress toward wide spread implementation of personalized medicine. In an effort to improve access to and appropriate utilization of valid, reliable genetic tests and to secure the promise of personalized medicine for all Americans, then-Sen. Barack Obama, D-Ill., introduced the Genomics and Personalized Medicine Act in 2006 during the 109th Congress. Most recently, Reps. Patrick J. Kennedy, D-R.I., and Anna Eshoo, D-Calif., introduced H.R. 5440, the 2010 version of the bill.

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U.S. Patent Reform – USPTO Solicits Public Comment Regarding Genetic Testing Study

Posted in Biomarkers; Companion Diagnostics; Diagnostic Methods; Gene Patents; Genetic Testing; Patent Reform

As most in the patent community know, last Friday, September 16, 2011, President Obama signed into law the long-awaited patent reform bill, known as the Leahy-Smith America Invents Act (“AIA”). There are many moving parts to this complicated piece of legislation—many consider it to implement the most sweeping changes to U.S. patent law since enactment of the 1952 Patent Act.

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Subject Matter Jurisdiction Challenged in Supreme Court’s Review of Mayo v. Prometheus

Posted in Companion Diagnostics; Gene Patents; Genetic Testing

An international intellectual property association filed an amicus curie brief urging the U.S Supreme Court to dismiss the dispute and issue presented in Mayo Collaborative Services v. Prometheus Laboratories, Inc., 131 S.Ct. 3027 (2011), arguing that the district court and Federal Circuit lacked subject matter jurisdiction. The amici argued that for reasons that are not clear, the district court and the Federal Circuit unapplied, misapplied, or simply overlooked Congress’ legislative efforts to achieve a globally-desired limitation of exclusive patent rights.

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U.S. Patent Reform – What Does It Mean To Personalized Medicine?

Posted in 35 U.S.C. 101; Biomarkers; Companion Diagnostics; Diagnostic Methods; Gene Patents; Genetic Testing; Patent Reform

Yesterday, September 8, 2011, the Senate passed by a vote of 89-9 the House version of the patent reform bill H.R. 1249, also known as the Leahy-Smith America Invents Act, without amendment. Consequently, after many years of discussion, debate and hand-wringing, significant patent reform is imminent. In fact, at this point, the legislation only requires action by President Obama, who has already promised to sign the bill.

Most provisions in the bill impact U.S. patent practice generally, including moving towards a first-to-file system, expanding prior user rights as a defense to infringement, eliminating interference proceedings, and creating new USPTO proceedings for post-grant review. One aspect of the bill, however, in a section entitled “Study on Genetic Testing,” impacts the personalized medicine industry in particular.  See previous discussion on this provision on our June 26 post and August 3 post.

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In Classen, the Federal Circuit Determines That Certain Method Claims Satisfy 35 USC § 101

Posted in 35 U.S.C. 101; Biomarkers; Companion Diagnostics; Diagnostic Methods; Infringement

On August 31, 2011, the Federal Circuit issued a precedential decision in Classen Immunotherapies, Inc. v. Biogen Idec (App. 2006-1643, -1649), a patent case of significant interest to the personalized medicine industry. As with the Prometheus case, this case addresses patent-eligibility of certain types of method claims. The Federal Circuit decided Classen on remand from the Supreme Court after Bilski v. Kappos (U.S. 2010). The Federal Circuit previously issued a first decision in Classen in 2008. The original panel, comprising Circuit Judges Newman and Moore and District Judge Farnan (sitting by designation), held in a one paragraph, non-precedential decision authored by Judge Moore that Classen’s claims failed to satisfy 35 USC § 101.

This time around, the Federal Circuit takes a closer look at Classen’s claims, and determines that two of the three Classen patents at issue are directed to patent-eligible subject matter under 35 USC § 101.

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Top Twelve Practice Tips Following Myriad and Prometheus

Posted in 35 U.S.C. 101; Biomarkers; Companion Diagnostics; Diagnostic Methods; Gene Patents

*  Written by Kristel Schorr and Jackie Wright Bonilla, both partners in the Washington, DC office of Foley & Lardner LLP

As most in the biotech industry know by now, the Federal Circuit recently issued its decision in Assn. Molec. Path. et al. v. USPTO et al., a case otherwise known as Myriad or the “gene patenting” case.  For more discussion, see July 29 post and July 31 post. The majority (Judge Lourie, joined by Judge Moore) held all “isolated DNA” claims at issue patent-eligible under 35 U.S.C. §101. The majority (joined by both Judges Moore and Bryson) also held as patent-ineligible certain diagnostic method claims that in effect recited only “comparing” or “analyzing” DNA sequences. Notably, each of the three judges on the panel wrote a separate opinion. In doing so, each expressed a different view, even if two of the three judges agreed on the ultimate holding regarding “isolated DNA,” and all judges agreed regarding the method claims at issue.

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USPTO – Seeking Comments On Patent Reform Bill

Posted in Companion Diagnostics; Patent Reform

The U.S. Patent and Trademark Office (USPTO) announced that it is proactively seeking public comments on the Leahy-Smith America Invents Act (AIA), H.R. 1249, passed by the U.S. House of Representatives on June 23, 2011, and currently pending before the U.S. Senate.  The AIA requires the USPTO to undertake a series of rulemakings to implement the Act.  Because several provisions of the AIA require implementation within a period of one year from enactment, the USPTO is anticipating that expeditious rulemaking proceedings will be required.

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CDC Issues Requests for Comments to Assess and Implement Public Health Genomics

Posted in Companion Diagnostics; FDA; Genomics and Personalized Medicine Act

The Centers for Disease Control and Prevention (“CDC”), located within the federal Department of Health and Human Services (“HHS”) is seeking public comments, data or other information to assess the current research, policy and practice environment in public health genomics. 2011-16422.pdf  The information is solicited to assist the Office of Public Health Genomics (“OPHG”) of the CDC with its strategic plan to integrate genomics into public health research, policy, and programs with the goal of improving the health and well being of the public.  Electronic or written comments must be received on or before August 1, 2011.

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FDA “Draft Guidance” for Companion Diagnostic Devices

Posted in Companion Diagnostics; Diagnostic Methods; FDA; FDA Guidelines

On July 14, 2011, the FDA issued “Draft Guidance” relating to regulatory approval of in vitro companion diagnostic devices/tests, also called “IVD companion diagnostic devices.” The FDA intends the Guidance to assist those (1) who develop a therapeutic product that depends on the use of such a device/test for the product’s safe and effective use, and (2) who develop a companion diagnostic device intended for use with a corresponding therapeutic product.  The FDA invites comments and suggestions regarding the Draft Guidance within 60 days. 

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Diagnostic Method Claims and Patent Eligibility – Supreme Court Has Something to Say In Prometheus v. Mayo

Posted in 35 U.S.C. 101; Biomarkers; Companion Diagnostics; Diagnostic Methods

Today, in a short but sweet statement, the Supreme Court granted the petition for certiorari in Prometheus v. Mayo, 628 F.3d 1347 (Fed. Cir. 2010) (finding method claims relevant to personalized medicine patent eligible) (petition for cert. filed March 2011).

As discussed in our previous Personalized Medicine Bulletin post, parties once again petitioned for certiorari in the Prometheus case, after the Federal Circuit addressed this case (for the second time) in light of the Supreme Court’s decision in Bilski v. Kappos (2010).  Because of the importance of this case to the personalized medicine industry, claims at issue in Prometheus bear repeating here.  Representative claims include:

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PhRMA CEO Speaks at PMC’s Annual State of Personalized Medicine Luncheon

Posted in Biomarkers; Companion Diagnostics; FDA; Reimbursement

On June 9, 2011, the Personalized Medicine Coalition (PMC) hosted its Seventh Annual State of Personalized Medicine Luncheon in Washington, D.C.  As stated on its website, PMC’s mission “is to build the foundation that underpins the advancement of personalized medicine as a viable solution to the challenges of efficacy, safety and cost.”  This year’s luncheon featured John J. Castellani, President and CEO of Pharmaceutical Research and Manufacturers of America (PhRMA) as its keynote speaker.

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Inducing Infringement of a Diagnostic Method: Consult the Supreme Court’s New Test

Posted in Companion Diagnostics; Diagnostic Methods; Infringement

A patent’s value is determined by the economic monopoly provided to the patent holder.  The claims of the patent define the monopoly and therefore are the core of its value.  Infringement of a patent claim is the legal cause of action asserted by a patent holder, and one does not infringe a claim unless all elements of that claim are practiced.  Nevertheless, under section 271(b) of the patent statute, one can still be held to infringe a claim if one actively encourages or urges another to infringe.

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